Thursday, June 15, 2006

Jurnal Protein Engineering Design & Selection Vol. 18 Nomor 1 - 6 2005

PROTEIN ENGINEERING DESIGN AND SELECTION -- TABLE OF CONTENT VOLUME 18 NO. 1-9 ( FULL TEXT)

ORIGINAL ARTICLES: NO.1

Kin-Ming Lo, Jinyang Zhang, Yaping Sun, Bo Morelli, Yan Lan, Scott Lauder, Beatrice Brunkhorst, Gordon Webster, Sophie Hallakou-Bozec, Lilliane Doaré, and Stephen D. Gillies
Engineering a pharmacologically superior form of leptin for the treatment of obesity
PEDS Advance Access published on March 14, 2005
Protein Engineering, Design and Selection 2005 18: 1-10; doi:10.1093/protein/gzh102

Ozlem Keskin and Ruth Nussinov
Favorable scaffolds: proteins with different sequence, structure and function may associate in similar ways
PEDS Advance Access published on February 24, 2005
Protein Engineering, Design and Selection 2005 18: 11-24; doi:10.1093/protein/gzh095

S. Shulga-Morskoy and B.E. Rich
Bioactive IL7-diphtheria fusion toxin secreted by mammalian cells
PEDS Advance Access published on March 14, 2005
Protein Engineering, Design and Selection 2005 18: 25-31; doi:10.1093/protein/gzi007

Johannes Müllegger, Michael Jahn, Hong-Ming Chen, R.Antony J. Warren, and Stephen G. Withers
Engineering of a thioglycoligase: randomized mutagenesis of the acid–base residue leads to the identification of improved catalysts
PEDS Advance Access published on March 14, 2005
Protein Engineering, Design and Selection 2005 18: 33-40; doi:10.1093/protein/gzi003

Susanne Cranz-Mileva, Claire T. Friel, and Sheena E. Radford
Helix stability and hydrophobicity in the folding mechanism of the bacterial immunity protein Im9
PEDS Advance Access published on March 15, 2005
Protein Engineering, Design and Selection 2005 18: 41-50; doi:10.1093/protein/gzi002

C. Roodveldt and D.S. Tawfik
Directed evolution of phosphotriesterase from Pseudomonas diminuta for heterologous expression in Escherichia coli results in stabilization of the metal-free state
PEDS Advance Access published on March 15, 2005
Protein Engineering, Design and Selection 2005 18: 51-58; doi:10.1093/protein/gzi005


ORIGINAL ARTICLES: NO.2

H. Liao, W. Yeh, D. Chiang, R.L. Jernigan, and B. Lustig
Protein sequence entropy is closely related to packing density and hydrophobicity
PEDS Advance Access published on March 23, 2005
Protein Engineering, Design and Selection 2005 18: 59-64; doi:10.1093/protein/gzi009

Ting Guo, Yanxin Shi, and Zhirong Sun
A novel statistical ligand-binding site predictor: application to ATP-binding sites
PEDS Advance Access published on March 30, 2005
Protein Engineering, Design and Selection 2005 18: 65-70; doi:10.1093/protein/gzi006

M.Nurul Islam, Shinji Sueda, and Hiroki Kondo
Construction of new forms of pyruvate carboxylase to assess the allosteric regulation by acetyl-CoA
PEDS Advance Access published on March 23, 2005
Protein Engineering, Design and Selection 2005 18: 71-78; doi:10.1093/protein/gzi011

Tarmo P. Roosild and Senyon Choe
Redesigning an integral membrane K+ channel into a soluble protein
PEDS Advance Access published on March 23, 2005
Protein Engineering, Design and Selection 2005 18: 79-84; doi:10.1093/protein/gzi010

Catherine Paradis-Bleau, François Sanschagrin, and Roger C. Levesque
Peptide inhibitors of the essential cell division protein FtsA
PEDS Advance Access published on March 24, 2005
Protein Engineering, Design and Selection 2005 18: 85-91; doi:10.1093/protein/gzi008

Ryota Fujii, Yuichi Nakagawa, Jun Hiratake, Atsushi Sogabe, and Kanzo Sakata
Directed evolution of Pseudomonas aeruginosa lipase for improved amide-hydrolyzing activity
PEDS Advance Access published on March 23, 2005
Protein Engineering, Design and Selection 2005 18: 93-101; doi:10.1093/protein/gzi001

Veli-Pekka Jaakola, Jaime Prilusky, Joel L. Sussman, and Adrian Goldman
G protein-coupled receptors show unusual patterns of intrinsic unfolding
PEDS Advance Access published on March 24, 2005
Protein Engineering, Design and Selection 2005 18: 103-110; doi:10.1093/protein/gzi004


ORIGINAL ARTICLES: NO. 3

Jeffrey C. Way, Scott Lauder, Beatrice Brunkhorst, Su-Ming Kong, An Qi, Gordon Webster, Islay Campbell, Sue McKenzie, Yan Lan, Bo Marelli, Lieu Anh Nguyen, Steven Degon, Kin-Ming Lo, and Stephen D. Gillies
Improvement of Fc–erythropoietin structure and pharmacokinetics by modification at a disulfide bond
PEDS Advance Access published on April 8, 2005
Protein Engineering, Design and Selection 2005 18: 111-118; doi:10.1093/protein/gzi021

Thijs Beuming and Harel Weinstein
Modeling membrane proteins based on low-resolution electron microscopy maps: a template for the TM domains of the oxalate transporter OxlT
PEDS Advance Access published on April 8, 2005
Protein Engineering, Design and Selection 2005 18: 119-125; doi:10.1093/protein/gzi013

A. Pandini and L. Bonati
Conservation and specialization in PAS domain dynamics
PEDS Advance Access published on April 8, 2005
Protein Engineering, Design and Selection 2005 18: 127-137; doi:10.1093/protein/gzi017

Mihoko Saito, Takuji Oyama, and Tsuyoshi Shirai
Detection of subunit interfacial modifications by tracing the evolution of clamp–loader complex
PEDS Advance Access published on April 8, 2005
Protein Engineering, Design and Selection 2005 18: 139-145; doi:10.1093/protein/gzi016

Brian Albarran, Richard To, and Patrick S. Stayton
A TAT–streptavidin fusion protein directs uptake of biotinylated cargo into mammalian cells
PEDS Advance Access published on April 8, 2005
Protein Engineering, Design and Selection 2005 18: 147-152; doi:10.1093/protein/gzi014

David Ott, Yvonne Neldner, Régis Cèbe, Igor Dodevski, and Andreas Plückthun
Engineering and functional immobilization of opioid receptors
PEDS Advance Access published on March 24, 2005
Protein Engineering, Design and Selection 2005 18: 153-160; doi:10.1093/protein/gzi012


ORIGINAL ARTICLES: NO. 4

Susan Idicula-Thomas and Petety V. Balaji
Understanding the relationship between the primary structure of proteins and their amyloidogenic propensity: clues from inclusion body formation
PEDS Advance Access published on April 22, 2005
Protein Engineering, Design and Selection 2005 18: 175-180; doi:10.1093/protein/gzi022

Agnieszka A. Chmiel, Monika Radlinska, Sebastian D. Pawlak, Daniel Krowarsch, Janusz M. Bujnicki, and Krzysztof J. Skowronek
A theoretical model of restriction endonuclease NlaIV in complex with DNA, predicted by fold recognition and validated by site-directed mutagenesis and circular dichroism spectroscopy
PEDS Advance Access published on April 22, 2005
Protein Engineering, Design and Selection 2005 18: 181-189; doi:10.1093/protein/gzi019

Zhimou Wen, Jerome Baudry, May R. Berenbaum, and Mary A. Schuler
Ile115Leu mutation in the SRS1 region of an insect cytochrome P450 (CYP6B1) compromises substrate turnover via changes in a predicted product release channel
PEDS Advance Access published on April 18, 2005
Protein Engineering, Design and Selection 2005 18: 191-199; doi:10.1093/protein/gzi023

Luke H. Bradley, Ralph E. Kleiner, Anna F. Wang, Michael H. Hecht, and David W. Wood
An intein-based genetic selection allows the construction of a high-quality library of binary patterned de novo protein sequences
PEDS Advance Access published on April 22, 2005
Protein Engineering, Design and Selection 2005 18: 201-207; doi:10.1093/protein/gzi020


ORIGINAL ARTICLES: NO. 5

Wenjun Zheng and Sebastian Doniach
Fold recognition aided by constraints from small angle X-ray scattering data
PEDS Advance Access published on April 21, 2005
Protein Engineering, Design and Selection 2005 18: 209-219; doi:10.1093/protein/gzi026

Jonathan S. Oakhill, Brian J. Sutton, Andrew R. Gorringe, and Robert W. Evans
Homology modelling of transferrin-binding protein A from Neisseria meningitidis
PEDS Advance Access published on April 8, 2005
Protein Engineering, Design and Selection 2005 18: 221-228; doi:10.1093/protein/gzi024

Heather M. Went and Sophie E. Jackson
Ubiquitin folds through a highly polarized transition state
PEDS Advance Access published on April 27, 2005
Protein Engineering, Design and Selection 2005 18: 229-237; doi:10.1093/protein/gzi025

G.J. Williams, T. Woodhall, A. Nelson, and A. Berry
Structure-guided saturation mutagenesis of N-acetylneuraminic acid lyase for the synthesis of sialic acid mimetics
PEDS Advance Access published on May 16, 2005
Protein Engineering, Design and Selection 2005 18: 239-246; doi:10.1093/protein/gzi027

Orly Noivirt, Miriam Eisenstein, and Amnon Horovitz
Detection and reduction of evolutionary noise in correlated mutation analysis
PEDS Advance Access published on May 23, 2005
Protein Engineering, Design and Selection 2005 18: 247-253; doi:10.1093/protein/gzi029


ORIGINAL ARTICLES: NO. 6

S.-H. Hong, Q. Hao, and W. Maret
Domain-specific fluorescence resonance energy transfer (FRET) sensors of metallothionein/thionein
PEDS Advance Access published on May 23, 2005
Protein Engineering, Design and Selection 2005 18: 255-263; doi:10.1093/protein/gzi031

Norio Hamamatsu, Takuyo Aita, Yukiko Nomiya, Hidefumi Uchiyama, Motowo Nakajima, Yuzuru Husimi, and Yasuhiko Shibanaka
Biased mutation-assembling: an efficient method for rapid directed evolution through simultaneous mutation accumulation
PEDS Advance Access published on May 31, 2005
Protein Engineering, Design and Selection 2005 18: 265-271; doi:10.1093/protein/gzi028

Daisuke Kajihara, Takahiro Hohsaka, and Masahiko Sisido
Synthesis and sequence optimization of GFP mutants containing aromatic non-natural amino acids at the Tyr66 position
PEDS Advance Access published on May 31, 2005
Protein Engineering, Design and Selection 2005 18: 273-278; doi:10.1093/protein/gzi033

Nobuhide Doi, Koichi Kakukawa, Yuko Oishi, and Hiroshi Yanagawa
High solubility of random-sequence proteins consisting of five kinds of primitive amino acids
PEDS Advance Access published on May 31, 2005
Protein Engineering, Design and Selection 2005 18: 279-284; doi:10.1093/protein/gzi034

Bernhard Schimmele, Nico Gräfe, and Andreas Plückthun
Ribosome display of mammalian receptor domains
PEDS Advance Access published on June 2, 2005
Protein Engineering, Design and Selection 2005 18: 285-294; doi:10.1093/protein/gzi030

Jonathan M. Cuthbertson, Declan A. Doyle, and Mark S.P. Sansom
Transmembrane helix prediction: a comparative evaluation and analysis
PEDS Advance Access published on June 2, 2005
Protein Engineering, Design and Selection 2005 18: 295-308; doi:10.1093/protein/gzi032


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